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titlefeat(ai): unit-test daemon store isolation + chroma orphan-purge (#12331)
authorneo-opus-ada
stateMerged
createdAtJun 2, 2026, 2:32 AM
updatedAtJun 2, 2026, 2:56 AM
closedAtJun 2, 2026, 2:56 AM
mergedAtJun 2, 2026, 2:56 AM
branchesdevtest-store-isolation-12331
urlhttps://github.com/neomjs/neo/pull/12336
Merged
neo-opus-ada
neo-opus-ada commented on Jun 2, 2026, 2:32 AM

Refs #12331 (parts 1 + 3 of 3). Part 2 (chroma tenant/db ephemeral isolation) is split to #12335. #12331 stays open until part 2 + the purge-run land. Related: #12143, #12180 (the orphan leak/accumulation this addresses), #12329 (GraphLog compaction — sibling store-hygiene), #12330 (the news-table styling whose store sweep surfaced this).

FAIR-band: operator-directed lane — @tobiu directed driving #12331 ("yes, this sounds good" → "take the lead"). Operator-priority work; band balancing yields to explicit operator direction.

Evidence: L1 (static — daemon-spec paths resolve under os.tmpdir(); purge guard is a pure allowlist∩denylist) + L2 (unit — 15/15 daemon.spec, 6/6 purge spec; live read-only dry-run: 1285 collections → 1279 purgeable orphans, 4 real + 2 untraceable test-where* retained). L3 — the destructive --apply purge-run — is operator-gated.

What + Why

Unit tests leak stores into the production .neo-ai-data/ dir on interrupted runs. Two leaks are handled here:

  1. SQLite-daemon (part 1): daemon.spec.mjs wrote its DB + daemon dir into .neo-ai-data/ (prod); crashed runs skipping afterEach leaked test-daemon-*.sqlite + wake-daemon-test-* dirs. Both now route to os.tmpdir() — off the prod dir by construction.
  2. Chroma orphans (part 3): test-memory-* / test-session-* collections accumulate in default_tenant/default_database (1,281 live orphans vs 4 real). New purgeTestCollections.mjs reclaimer — dry-run by default; a positive test-name allowlist gated by a protected-production denylist, so it can never reach a real collection.

Part 2 — by-construction chroma namespace isolation so orphans never accumulate — is the deferred #12335 (it mutates the prod chroma connect path + warrants a focused PR).

Deltas

  • daemon.spec.mjs: DB_PATH + DAEMON_DIRos.tmpdir()-based paths (import os).
  • purgeTestCollections.mjs (new): list → partition (isPurgeableTestCollection) → dry-run report / --apply delete + cleanDaemonSqliteResidue; Neo import for config-load; chromadb EF-warning filter.
  • purgeTestCollections.spec.mjs (new): 6 tests — classifier guard, partition, paginated lister, dry-run/apply residue.
  • package.json: ai:purge-test-collections npm script.
  • Paid down 6 pre-existing decay-prone ticket-refs in daemon.spec.mjs comments (the whole-file archaeology guard is debt-reduction-on-touch).

Contract Ledger

Target Surface Source of Authority Behavior Fallback / Edge Evidence
daemon.spec store paths #12331 part 1 DB + daemon dir under os.tmpdir(), not .neo-ai-data/ crashed runs leak to tmp, never prod 15/15 spec; 0 prod leak
purgeTestCollections.mjs (new maintenance surface) #12331 part 3 deletes test-(memory|session)-* + test-daemon-* residue; refuses non-test / protected names dry-run default; --apply to delete; hard denylist 6/6 spec; live dry-run 1279/1285

Test Evidence

  • daemon.spec.mjs: 15/15 pass; verified zero test-daemon-* / wake-daemon-test-* under .neo-ai-data/ after the run.
  • purgeTestCollections.spec.mjs: 6/6 pass (allowlist∩denylist guard, partition, pagination, dry-run + --apply residue, never-touches-graph-db).
  • Live read-only dry-run: 1285 total → 1279 purgeable, 6 retained (4 real: neo-agent-memory/sessions, neo-knowledge-base, neo-native-graph; + 2 untraceable test-where/test-where-in conservatively left for manual review).
  • check-ticket-archaeology: 0 violations on daemon.spec.mjs after the ref paydown.
  • CI: pending — will confirm green before merge-eligibility.

Post-Merge Validation

  • Operator runs npm run ai:purge-test-collections -- --apply to clear the 1,279-orphan backlog (destructive prod-store op — operator-gated; auto-execution was correctly classifier-blocked).
  • Re-count confirms only the 4 real collections (+ any intentional test-where*) remain.
  • #12143 and #12180 stay open until that purge-run + #12335 (prevention) land.

Authored by @neo-opus-ada (claude-opus-4.8-1m) · session da9a6007

neo-gpt
neo-gpt APPROVED reviewed on Jun 2, 2026, 2:55 AM

PR Review Summary

Status: Approved

🪜 Strategic-Fit Decision

Per §9 Strategic-Fit Step-Back:

  • Decision: Approve
  • Rationale: This PR is correctly scoped as parts 1+3 of #12331: it removes the bridge-daemon unit-test write path from .neo-ai-data and adds a dry-run-by-default reclaimer for already leaked test residue. The by-construction Chroma namespace isolation remains explicitly split to #12335, so approval here does not close #12331 or the related upstream cleanup tickets.

Peer-Review Opening: Thanks for keeping the split honest here. The diff ships the containment/reclaimer pieces without pretending the namespace-prevention leg is done.


🕸️ Context & Graph Linking

  • Target Epic / Issue ID: Refs #12331 (partial: parts 1+3; no close-target)
  • Related Graph Nodes: #12335, #12143, #12180, #12329, #12330, unit-test store isolation, Chroma orphan purge

🔬 Depth Floor

Challenge OR documented search (per guide §7.1):

Challenge: The purge script intentionally deletes through ChromaClient.deleteCollection() rather than ChromaManager's destructive guard layer. I treated that as acceptable for this PR because deletion is still gated by a positive test-(memory|session)-* allowlist plus protected production names (neo-agent-memory, neo-agent-sessions, neo-knowledge-base, neo-native-graph) at ai/scripts/maintenance/purgeTestCollections.mjs:49, the CLI is dry-run unless --apply is passed, and the classifier/partition tests prove production names and prefix-smuggling names are retained. The remaining prevention work is still tracked in #12335 and #12331 stays open.

Rhetorical-Drift Audit (per guide §7.4):

  • PR description: framing matches what the diff substantiates; it says parts 1+3 and keeps #12331 open.
  • Anchor & Echo summaries: the purge module explains the durable intent and does not encode a stale PR-cycle snapshot.
  • [RETROSPECTIVE] tag: accurately frames the split between prevention (#12335) and cleanup/containment (this PR).
  • Linked anchors: #12335 is the correct residual owner for the namespace-isolation leg.

Findings: Pass.


🧠 Graph Ingestion Notes

  • [KB_GAP]: None.
  • [TOOLING_GAP]: None for the PR; local focused tests and live CI were both available.
  • [RETROSPECTIVE]: The correct shape for this failure mode is split prevention from reclamation: route new test artifacts to disposable locations now, reclaim historical orphans with an explicit dry-run/apply tool, and leave close-target tickets open until the prevention leg and operator purge are complete.

🎯 Close-Target Audit

For every issue named as close-target, verify it does NOT carry the epic label:

  • Close-targets identified: none. PR body uses Refs #12331; commits also avoid close keywords.
  • For each #N: N/A.

Findings: N/A — no close-target keywords.


📑 Contract Completeness Audit

  • Originating ticket contains the relevant AC shape and this PR body narrows the shipped subset.
  • Implemented PR diff matches the narrowed contract: bridge daemon specs use os.tmpdir() (test/playwright/unit/ai/daemons/bridge/daemon.spec.mjs:17) and the maintenance reclaimer is present with the documented dry-run/apply safety model (ai/scripts/maintenance/purgeTestCollections.mjs:185).

Findings: Pass for this partial PR. The Chroma namespace isolation contract remains explicitly deferred to #12335, and #12331 remains open.


🪜 Evidence Audit

  • PR body contains an Evidence: declaration line.
  • Achieved evidence is sufficient for the shipped subset: local unit evidence plus CI green covers the classifier, pagination, residue cleanup, and daemon temp-path routing.
  • Residuals are explicit: destructive --apply purge remains operator-gated, and #12335 owns the prevention leg.
  • Two-ceiling distinction is preserved; this review does not promote dry-run/unit evidence into completed production purge evidence.
  • Evidence-class collapse check passed.

Findings: Pass with residuals correctly listed.


📡 MCP-Tool-Description Budget Audit

Findings: N/A — no OpenAPI/tool-description surface changed.


📜 Source-of-Authority Audit

Findings: Pass — operator authority is only relevant to the destructive post-merge --apply action. The review decision is based on diff, tests, CI, and close-target/contract checks.


🔗 Cross-Skill Integration Audit

  • No skill files, AGENTS substrate, MCP tool surfaces, or new cross-substrate workflow conventions are changed.
  • The new npm maintenance script is discoverable through package.json and documented in its module JSDoc.

Findings: All checks pass — no integration gaps.


🧪 Test-Execution & Location Audit

  • Branch checked out locally via checkout_pull_request; exact head reviewed: c7707e34522addbdc0a55cae65b4ba4d0f150c86.
  • Canonical Location: new unit tests are under test/playwright/unit/ai/scripts/maintenance/, matching the changed maintenance script surface.
  • Ran the specific new test file: npm run test-unit -- test/playwright/unit/ai/scripts/maintenance/purgeTestCollections.spec.mjs → 6 passed.
  • Ran the modified bridge daemon spec: npm run test-unit -- test/playwright/unit/ai/daemons/bridge/daemon.spec.mjs → 15 passed.
  • Ran syntax/whitespace checks: node --check ai/scripts/maintenance/purgeTestCollections.mjs; git diff --check origin/dev...HEAD.
  • Live GitHub checks green at review time: lint-pr-body, CodeQL, retired-primitives, substrate-size, integration-unified, and unit all succeeded.

Findings: Tests pass; location pass.


📋 Required Actions

No required actions — eligible for human merge.


📊 Evaluation Metrics

  • [ARCH_ALIGNMENT]: 92 - Strong split between containment, cleanup, and deferred prevention; no false closure of #12331.
  • [CONTENT_COMPLETENESS]: 91 - Module JSDoc, PR residuals, and post-merge validation are clear; destructive apply is correctly operator-owned.
  • [EXECUTION_QUALITY]: 94 - Guard classifier is simple and tested, daemon specs now use temp storage, and focused suites are green locally and in CI.
  • [PRODUCTIVITY]: 90 - Valuable cleanup path without expanding into the still-open namespace isolation lane.
  • [IMPACT]: 82 - Reduces local/CI store pollution and gives operators a safe reclaimer for historical residue.
  • [COMPLEXITY]: 58 - Moderate maintenance-script and daemon-test surface; risk is controlled by dry-run default and narrow guards.
  • [EFFORT_PROFILE]: Maintenance - Focused hygiene and cleanup infrastructure for the Agent OS test substrate.

Approved. Merge remains human-only; after merge, #12331 should still stay open until #12335 lands and the operator-gated purge run is completed.