What is the Neural Link?

The Neural Link is a bi-directional bridge that connects AI agents directly to the Neo.mjs runtime. It lets agents inspect the Scene Graph, component state, event listeners, computed styles, and DOM rectangles, and mutate the running application in real time.

Why is Neo.mjs called an Application Engine instead of a framework?

Neo.mjs maintains persistent application objects in a worker-backed Scene Graph instead of compiling application state away into ephemeral DOM nodes. That architecture enables multi-window orchestration, runtime permutation, and deep AI introspection.

What is Context Engineering?

Context Engineering shapes the information and tool environment around AI agents. Neo.mjs implements it through Knowledge Base, Memory Core, GitHub Workflow, and Neural Link MCP servers for frontier harnesses, plus a File System MCP server for internal Neo.ai.Agent local loops.

What is the Neo.mjs Agent OS?

The Neo.mjs Agent OS is the repository Brain: source code and services for Memory Core, Knowledge Base, Active Hybrid GraphRAG, DreamService, Golden Path synthesis, A2A coordination, and Neural Link tooling.

Frontmatter

id	11552
title	Resolve stale AGENTS.md §-references in skill substrate post-#11551
state	Closed
labels	documentationenhancementaimodel-experience
assignees	neo-gemini-pro
createdAt	May 18, 2026, 12:19 AM
updatedAt	May 18, 2026, 1:58 AM
githubUrl	https://github.com/neomjs/neo/issues/11552
author	neo-gemini-pro
commentsCount	0
parentIssue	null
subIssues	[]
subIssuesCompleted	0
subIssuesTotal	0
blockedBy	[]
blocking	[]
closedAt	May 18, 2026, 1:58 AM

Resolve stale AGENTS.md §-references in skill substrate post-#11551

Closed v13.0.0/archive-v13-0-0-chunk-12 documentationenhancementaimodel-experience

neo-gemini-pro commented on May 18, 2026, 12:19 AM

Context PR #11551 successfully renumbered sections in AGENTS.md (removing the gap between §20 and §22). However, as identified during the Cycle-3 audit, this renumbering invalidated several downstream section references (§-refs) in the skill substrate. Option A (same-PR polish) is no longer viable because PR #11551 has already been merged to dev.

The Problem Stale cross-references break the routing map for agents and operators navigating the skill architecture. Specifically, AGENTS.md §22 (now §21) and §23 (now §22) are cited incorrectly in multiple places. Furthermore, ADR 0008 incorrectly cites AGENTS.md §21 as the Workflow Skills table, which is now structurally broken since §21 currently points to the Mailbox Check.

The Architectural Reality

References to AGENTS.md §22 (Mailbox Check) need to point to §21.
References to AGENTS.md §23 (Sibling-file-lift) need to point to §22.
ADR 0008 citations of §21 (Workflow Skills table) must be amended to reflect its removal/retirement in favor of the skills manifest.

The Fix Update the 7 identified stale §-references across the skill substrate. Amend ADR 0008 to correct the broken citations.

Acceptance Criteria

Update lead-role/SKILL.md (line 3) to point to §21 instead of §22.
Update skills.manifest.json (lines 117, 218) to reflect new section numbers.
Update pull-request-workflow.md (line 31) to point to §21 instead of §22.
Update turn-memory-pre-flight-workflow.md (lines 24, 33) to point to correct section numbers.
Update structural-pre-flight/SKILL.md (line 3) to point to §22 instead of §23.
Update structural-pre-flight-workflow.md (lines 20, 31, 42, 66, 190) to point to §22 instead of §23.
Amend ADR 0008 (§2.1 and §3) to fix broken references to AGENTS.md §21.

Out of Scope

Structural rewrites of the referenced sections.
Additional substrate renumbering beyond the fallout of PR #11551.

Origin Session ID: d1aee218-8c42-4562-b2ec-f597284fa9d7 Retrieval Hint: "Substrate Stale Refs PR 11551"

tobiu referenced in commit 657e5fa - "docs(agentos): reconcile stale skill substrate references post-compaction (#11552) (#11553) on May 18, 2026, 1:58 AM

tobiu closed this issue on May 18, 2026, 1:58 AM