What is the 'Neural Link'?

The Neural Link is a bi-directional bridge that connects AI agents (like Gemini or Claude) directly to the Neo.mjs runtime. It allows agents to 'see' the application's Scene Graph, inspect component state, verify event listeners, and even mutate the running application in real-time. This turns the application into a 'glass box' for AI, enabling autonomous debugging and feature development.

Why is Neo.mjs called an 'Application Engine' instead of a framework?

Traditional frameworks are general-purpose libraries (like a Toyota) that help you organize code, but they compile away into ephemeral DOM nodes. Neo.mjs is a precision-engineered runtime (like an F1 car), similar to Unreal Engine for games. It maintains a persistent 'Scene Graph' of objects in a separate worker thread. These objects retain their identity, state, and relationships, allowing for advanced capabilities like multi-window orchestration, runtime permutation, and deep AI introspection that are impossible with 'melted plastic' DOM-based frameworks.

What is 'Context Engineering'?

Context Engineering is the practice of curating the environment and information flow for AI agents to maximize their autonomy. In Neo.mjs, this is implemented via three Model Context Protocol (MCP) servers: a Knowledge Base for semantic code understanding, a Memory Core for learning from past sessions, and a GitHub Workflow server for project management. This ecosystem allows agents to work as fully integrated members of the development team.

What is 'Object Permanence' in the context of Neo.mjs?

In Neo.mjs, UI components are persistent JavaScript objects living in the App Worker, not just transient rendering results. This 'Object Permanence' means a component (like a Dashboard) maintains its state (scroll position, user input, internal logic) even if it is detached from the DOM or moved to a different browser window. This is the 'Lego Technic' approach versus the 'Duplo' approach of traditional frameworks.

What is an 'Agent Operating System'?

Neo.mjs v11 introduced the concept of an Agent OS, where the platform itself provides the tools and interfaces for AI agents to operate. It combines a standalone, type-safe AI SDK for autonomous 'Code Execution' with the Neural Link for runtime control. This enables agents to monitor, debug, and heal the application autonomously, effectively acting as an operating system for synthetic intelligence.

How does Neo.mjs handle multi-window applications?

Neo.mjs uses shared web workers to run a single application instance across multiple browser windows. All windows share the same application state and data in real-time. Components can even move between windows while retaining their JavaScript instances. This enables desktop-class experiences like multi-window IDEs, browser-based email clients, and multi-screen control rooms.

What makes Neo.mjs different from React, Angular, or Vue?

Neo.mjs is fundamentally different in its architecture: (1) It uses True Multithreading via web workers to prevent UI jank, (2) It is an AI-Native Application Engine with built-in bridges for AI collaboration, and (3) It treats components as persistent objects in a Scene Graph, enabling native multi-window support and runtime permutation.

Frontmatter

id	7848
title	Epic: Documentation Overhaul for MCP & Agent OS Architecture
state	Closed
labels	documentationepicai
assignees	tobiu
createdAt	Nov 22, 2025, 9:14 AM
updatedAt	Nov 22, 2025, 9:35 AM
githubUrl	https://github.com/neomjs/neo/issues/7848
author	tobiu
commentsCount	1
parentIssue	null
subIssues	7849 Documentation: Create Guide for "Introduction to MCP & Agent OS" 7850 Documentation: Create Guide for "The Knowledge Base Server" 7851 Documentation: Create Guide for "The Memory Core Server" 7852 Documentation: Create Guide for "The GitHub Workflow Server" 7853 Documentation: Create Guide for "Code Execution with MCP"
subIssuesCompleted	5
subIssuesTotal	5
blockedBy	[]
blocking	[]
closedAt	Nov 22, 2025, 9:35 AM

Epic: Documentation Overhaul for MCP & Agent OS Architecture

Name: Neo.mjs Application Engine
Author: Neo.mjs

Closed v11.9.0 documentationepicai

tobiu commented on Nov 22, 2025, 9:14 AM

This epic tracks the creation of a comprehensive documentation section for the new "Agent OS" architecture introduced in v11.8.0.

The goal is to explain the Model Context Protocol (MCP) implementation, the three specific servers, and the code execution pattern to both human developers and AI agents.

tobiu added the documentation label on Nov 22, 2025, 9:14 AM

tobiu added the epic label on Nov 22, 2025, 9:14 AM

tobiu added the ai label on Nov 22, 2025, 9:14 AM

tobiu added sub-issue #7849 on Nov 22, 2025, 9:15 AM

tobiu added sub-issue #7850 on Nov 22, 2025, 9:15 AM

tobiu added sub-issue #7851 on Nov 22, 2025, 9:15 AM

tobiu added sub-issue #7852 on Nov 22, 2025, 9:15 AM

tobiu added sub-issue #7853 on Nov 22, 2025, 9:15 AM

tobiu assigned to @tobiu on Nov 22, 2025, 9:16 AM

tobiu referenced in commit 6a353c1 - "#7848 tree.json update" on Nov 22, 2025, 9:34 AM

tobiu Nov 22, 2025, 9:35 AM

initial draft version done, there will be follow-up tickets.

tobiu closed this issue on Nov 22, 2025, 9:35 AM