What is the 'Neural Link'?

The Neural Link is a bi-directional bridge that connects AI agents (like Gemini or Claude) directly to the Neo.mjs runtime. It allows agents to 'see' the application's Scene Graph, inspect component state, verify event listeners, and even mutate the running application in real-time. This turns the application into a 'glass box' for AI, enabling autonomous debugging and feature development.

Why is Neo.mjs called an 'Application Engine' instead of a framework?

Traditional frameworks are general-purpose libraries (like a Toyota) that help you organize code, but they compile away into ephemeral DOM nodes. Neo.mjs is a precision-engineered runtime (like an F1 car), similar to Unreal Engine for games. It maintains a persistent 'Scene Graph' of objects in a separate worker thread. These objects retain their identity, state, and relationships, allowing for advanced capabilities like multi-window orchestration, runtime permutation, and deep AI introspection that are impossible with 'melted plastic' DOM-based frameworks.

What is 'Context Engineering'?

Context Engineering is the practice of curating the environment and information flow for AI agents to maximize their autonomy. In Neo.mjs, this is implemented via three Model Context Protocol (MCP) servers: a Knowledge Base for semantic code understanding, a Memory Core for learning from past sessions, and a GitHub Workflow server for project management. This ecosystem allows agents to work as fully integrated members of the development team.

What is 'Object Permanence' in the context of Neo.mjs?

In Neo.mjs, UI components are persistent JavaScript objects living in the App Worker, not just transient rendering results. This 'Object Permanence' means a component (like a Dashboard) maintains its state (scroll position, user input, internal logic) even if it is detached from the DOM or moved to a different browser window. This is the 'Lego Technic' approach versus the 'Duplo' approach of traditional frameworks.

What is an 'Agent Operating System'?

Neo.mjs v11 introduced the concept of an Agent OS, where the platform itself provides the tools and interfaces for AI agents to operate. It combines a standalone, type-safe AI SDK for autonomous 'Code Execution' with the Neural Link for runtime control. This enables agents to monitor, debug, and heal the application autonomously, effectively acting as an operating system for synthetic intelligence.

How does Neo.mjs handle multi-window applications?

Neo.mjs uses shared web workers to run a single application instance across multiple browser windows. All windows share the same application state and data in real-time. Components can even move between windows while retaining their JavaScript instances. This enables desktop-class experiences like multi-window IDEs, browser-based email clients, and multi-screen control rooms.

What makes Neo.mjs different from React, Angular, or Vue?

Neo.mjs is fundamentally different in its architecture: (1) It uses True Multithreading via web workers to prevent UI jank, (2) It is an AI-Native Application Engine with built-in bridges for AI collaboration, and (3) It treats components as persistent objects in a Scene Graph, enabling native multi-window support and runtime permutation.

Frontmatter

id	8858
title	Markdown component: Exclude code blocks from ticket ID linking
state	Closed
labels	bugai
assignees	tobiu
createdAt	Jan 22, 2026, 12:14 AM
updatedAt	Jan 22, 2026, 12:15 AM
githubUrl	https://github.com/neomjs/neo/issues/8858
author	tobiu
commentsCount	1
parentIssue	null
subIssues	[]
subIssuesCompleted	0
subIssuesTotal	0
blockedBy	[]
blocking	[]
closedAt	Jan 22, 2026, 12:15 AM

Markdown component: Exclude code blocks from ticket ID linking

Name: Neo.mjs Application Engine
Author: Neo.mjs

Closed v11.23.1 bugai

tobiu commented on Jan 22, 2026, 12:14 AM

The current replaceTicketIds logic in Neo.component.Markdown aggressively replaces #123 patterns inside code blocks (fenced and inline) with HTML links. This corrupts code examples, especially CSS hex codes or comments containing hashes.

We need to update the modifyMarkdown method to:

Temporarily mask fenced code blocks.
Temporarily mask inline code blocks.
Perform the ticket ID replacement.
Restore the masked blocks.

This ensures that only ticket references in the prose text are linked.

tobiu added the bug label on Jan 22, 2026, 12:14 AM

tobiu added the ai label on Jan 22, 2026, 12:14 AM

tobiu referenced in commit 5313b09 - "fix(Markdown): Exclude code blocks from ticket ID linking (#8858)" on Jan 22, 2026, 12:14 AM

tobiu assigned to @tobiu on Jan 22, 2026, 12:15 AM

tobiu Jan 22, 2026, 12:15 AM

Input from Gemini 3 Pro:

✦ I have implemented the fix by introducing a masking step in modifyMarkdown.

Fenced code blocks (```...```) are replaced with __NEO_CODE_BLOCK_X__.

Inline code blocks ( ... ) are replaced with __NEO_INLINE_CODE_X__.

Ticket replacement runs on the masked text.

The masked tokens are replaced back with the original code.

This prevents #123 inside code blocks (like CSS hex colors or comments) from being turned into links. Changes pushed to dev in commit 5313b0968.

tobiu closed this issue on Jan 22, 2026, 12:15 AM