What is the 'Neural Link'?

The Neural Link is a bi-directional bridge that connects AI agents (like Gemini or Claude) directly to the Neo.mjs runtime. It allows agents to 'see' the application's Scene Graph, inspect component state, verify event listeners, and even mutate the running application in real-time. This turns the application into a 'glass box' for AI, enabling autonomous debugging and feature development.

Why is Neo.mjs called an 'Application Engine' instead of a framework?

Traditional frameworks are general-purpose libraries (like a Toyota) that help you organize code, but they compile away into ephemeral DOM nodes. Neo.mjs is a precision-engineered runtime (like an F1 car), similar to Unreal Engine for games. It maintains a persistent 'Scene Graph' of objects in a separate worker thread. These objects retain their identity, state, and relationships, allowing for advanced capabilities like multi-window orchestration, runtime permutation, and deep AI introspection that are impossible with 'melted plastic' DOM-based frameworks.

What is 'Context Engineering'?

Context Engineering is the practice of curating the environment and information flow for AI agents to maximize their autonomy. In Neo.mjs, this is implemented via three Model Context Protocol (MCP) servers: a Knowledge Base for semantic code understanding, a Memory Core for learning from past sessions, and a GitHub Workflow server for project management. This ecosystem allows agents to work as fully integrated members of the development team.

What is 'Object Permanence' in the context of Neo.mjs?

In Neo.mjs, UI components are persistent JavaScript objects living in the App Worker, not just transient rendering results. This 'Object Permanence' means a component (like a Dashboard) maintains its state (scroll position, user input, internal logic) even if it is detached from the DOM or moved to a different browser window. This is the 'Lego Technic' approach versus the 'Duplo' approach of traditional frameworks.

What is an 'Agent Operating System'?

Neo.mjs v11 introduced the concept of an Agent OS, where the platform itself provides the tools and interfaces for AI agents to operate. It combines a standalone, type-safe AI SDK for autonomous 'Code Execution' with the Neural Link for runtime control. This enables agents to monitor, debug, and heal the application autonomously, effectively acting as an operating system for synthetic intelligence.

How does Neo.mjs handle multi-window applications?

Neo.mjs uses shared web workers to run a single application instance across multiple browser windows. All windows share the same application state and data in real-time. Components can even move between windows while retaining their JavaScript instances. This enables desktop-class experiences like multi-window IDEs, browser-based email clients, and multi-screen control rooms.

What makes Neo.mjs different from React, Angular, or Vue?

Neo.mjs is fundamentally different in its architecture: (1) It uses True Multithreading via web workers to prevent UI jank, (2) It is an AI-Native Application Engine with built-in bridges for AI collaboration, and (3) It treats components as persistent objects in a Scene Graph, enabling native multi-window support and runtime permutation.

Frontmatter

id	9721
title	[Memory Core] GraphRAG Storage Synchronization and Index Stabilization
state	Closed
labels	bugaicore
assignees	tobiu
createdAt	Apr 5, 2026, 4:00 PM
updatedAt	Apr 5, 2026, 4:03 PM
githubUrl	https://github.com/neomjs/neo/issues/9721
author	tobiu
commentsCount	1
parentIssue	null
subIssues	[]
subIssuesCompleted	0
subIssuesTotal	0
blockedBy	[]
blocking	[]
closedAt	Apr 5, 2026, 4:03 PM

[Memory Core] GraphRAG Storage Synchronization and Index Stabilization

Name: Neo.mjs Application Engine
Author: Neo.mjs

Closedbugaicore

tobiu commented on Apr 5, 2026, 4:00 PM

Description

While investigating Epic #9714 (Hybrid GraphRAG Scoring Algorithm), significant regression bugs were identified within the memory-core SQLite testing environments that destabilized neighbor extraction, specifically affecting GraphService operations.

This ticket formalizes the fixes developed:

Index Eviction Leakage: Fixed RAM cache state leakage by cleanly flushing map structures when Base.collection.Store execution clear() operates across index instances.
Missing storage References for Singleton Connections: Repaired GraphService.mjs initialization. Re-used (Neo.get) singletons failed to hook onto newly declared storage contexts scoped to per-test path variants (leaving them tied down to legacy database bindings).
Implicit Test Crashing Check: Added explicit imports for Neo.manager.Instance missing within our test setups, preventing Neo.getId() exceptions during lazy database operations.
Validation cleanup: Safely eliminated monkey-patched data filtration (!inRAM) from GraphDatabase as the upstream neo.collection.Base#splice efficiently drops bulk inserts implicitly securely evaluating identities mapping checks in O(1).

Verification Status

The entire ai/mcp/server/memory-core/services/GraphService.spec.mjs suite runs correctly executing npm run test-unit against a locally bound test-.db instance with no duplications.

tobiu added the bug label on Apr 5, 2026, 4:00 PM

tobiu added the ai label on Apr 5, 2026, 4:00 PM

tobiu added the core label on Apr 5, 2026, 4:00 PM

tobiu assigned to @tobiu on Apr 5, 2026, 4:00 PM

tobiu referenced in commit 475013f - "fix: Memory Core Graph desynchronization, index leakage, and singleton storage bugs. (#9721)" on Apr 5, 2026, 4:03 PM

tobiu Apr 5, 2026, 4:03 PM

Completed fixes via 475013f99. Memory Core SQLite testing and Store indices natively stabilized without duplication.

tobiu closed this issue on Apr 5, 2026, 4:03 PM